{"id":5,"date":"2016-10-29T15:03:22","date_gmt":"2016-10-29T06:03:22","guid":{"rendered":"http:\/\/localhost\/?page_id=5"},"modified":"2019-07-16T09:10:00","modified_gmt":"2019-07-16T00:10:00","slug":"home","status":"publish","type":"page","link":"http:\/\/133.39.75.173\/","title":{"rendered":"Front Page"},"content":{"rendered":"<div id=\"pl-5\"  class=\"panel-layout\" ><div id=\"pg-5-0\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-5-0-0\"  class=\"panel-grid-cell\" ><div id=\"panel-5-0-0-0\" class=\"so-panel widget widget_sow-editor panel-first-child panel-last-child\" data-index=\"0\" ><div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-editor so-widget-sow-editor-base\"\n\t\t\t\n\t\t>\n<div class=\"siteorigin-widget-tinymce textwidget\">\n\t<h1 style=\"text-align: center;\"><strong>Important Notification!!!<\/strong><\/h1>\n<h4>We recently realized that FASTA files for a previous version of the OL genome had been linked in the sequence download page (All download links in the \"Retrieve bulk sequences\" page). Now you can download the latest version which has been described in Reuscher <em>et al<\/em>.,<em> Communications Biology,<\/em> 2018.<\/h4>\n<h4>\u00a0A previous version is of an OL genome assembled by us but with the Canu assembler (Koren and Walenz <em>et al<\/em>.,<em> Genome Research<\/em>, 2017), while the latest one is derived from the assembly using FALCON-Unzip (Chin <em>et al<\/em>., <em>Nature Methods<\/em>, 2016). Although both of them are high quality genome information, we chose the assembly from FALCON-Unzip which is designed to handle heterozygous diploid.<\/h4>\n<h3>The files have been replaced since <strong>July 10, 2019<\/strong>.<\/h3>\n<p>&nbsp;<\/p>\n<h3 style=\"text-align: center;\">The <em>Oryza longistaminata<\/em> Information Resource.<\/h3>\n<p style=\"text-align: justify;\">This is the\u00a0<em>Oryza longistaminata<\/em> Information Resource. On this website you will find genome and transcriptome information for the wild rice relative\u00a0<em>Oryza longistaminata<\/em>, or OL for short. Please click on the buttons above to access the different resources. To learn more about how this site was made and what data sources were used please go to \"About\".<\/p>\n<p style=\"text-align: justify;\">\u00a0One of the reasons for studying OL is its vigorous growth. It is a close relative of commercial rice varieties but produces a much higher biomass compared to rice varieties grown for their grains. Below you can find a time-lapse video comparing the growth of OL and\u00a0<em>Orzya sativa<\/em>\u00a0<em>japonica<\/em> cultivar \"Taichung 65\". Both videos show growth over two months.<\/p>\n<\/div>\n<\/div><\/div><\/div><\/div><div id=\"pg-5-1\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-5-1-0\"  class=\"panel-grid-cell\" ><div id=\"panel-5-1-0-0\" class=\"so-panel widget widget_sow-editor panel-first-child panel-last-child\" data-index=\"1\" ><div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-editor so-widget-sow-editor-base\"\n\t\t\t\n\t\t>\n<div class=\"siteorigin-widget-tinymce textwidget\">\n\t<p>&nbsp;<\/p>\n<h5 style=\"text-align: center;\"><em>Taichung 65<\/em><\/h5>\n<div style=\"width: 640px;\" class=\"wp-video\"><video class=\"wp-video-shortcode\" id=\"video-5-1\" width=\"640\" height=\"480\" preload=\"metadata\" controls=\"controls\"><source type=\"video\/mp4\" src=\"http:\/\/133.39.75.173\/wp-content\/uploads\/T65_growth.mp4?_=1\" \/><a href=\"http:\/\/133.39.75.173\/wp-content\/uploads\/T65_growth.mp4\">http:\/\/133.39.75.173\/wp-content\/uploads\/T65_growth.mp4<\/a><\/video><\/div>\n<\/div>\n<\/div><\/div><\/div><div id=\"pgc-5-1-1\"  class=\"panel-grid-cell\" ><div id=\"panel-5-1-1-0\" class=\"so-panel widget widget_sow-editor panel-first-child panel-last-child\" data-index=\"2\" ><div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-editor so-widget-sow-editor-base\"\n\t\t\t\n\t\t>\n<div class=\"siteorigin-widget-tinymce textwidget\">\n\t<p>&nbsp;<\/p>\n<h5 style=\"text-align: center;\"><em>Oryza longistaminata<\/em><\/h5>\n<div style=\"width: 640px;\" class=\"wp-video\"><video class=\"wp-video-shortcode\" id=\"video-5-2\" width=\"640\" height=\"480\" preload=\"metadata\" controls=\"controls\"><source type=\"video\/mp4\" src=\"http:\/\/133.39.75.173\/wp-content\/uploads\/OL_growth.mp4?_=2\" \/><a href=\"http:\/\/133.39.75.173\/wp-content\/uploads\/OL_growth.mp4\">http:\/\/133.39.75.173\/wp-content\/uploads\/OL_growth.mp4<\/a><\/video><\/div>\n<\/div>\n<\/div><\/div><\/div><\/div><\/div>","protected":false},"excerpt":{"rendered":"<p>Important Notification!!! We recently realized that FASTA files for a previous version of the OL genome had been linked in the sequence download page (All download links in the &#8220;Retrieve bulk sequences&#8221; page). Now you can download the latest version which has been described in Reuscher et al., Communications Biology, 2018. \u00a0A previous version is [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-5","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/pages\/5","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/133.39.75.173\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=5"}],"version-history":[{"count":49,"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/pages\/5\/revisions"}],"predecessor-version":[{"id":409,"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/pages\/5\/revisions\/409"}],"wp:attachment":[{"href":"http:\/\/133.39.75.173\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=5"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}