{"id":89,"date":"2016-11-04T15:35:14","date_gmt":"2016-11-04T06:35:14","guid":{"rendered":"http:\/\/192.168.2.4\/?page_id=89"},"modified":"2018-01-31T15:36:49","modified_gmt":"2018-01-31T06:36:49","slug":"89-2","status":"publish","type":"page","link":"http:\/\/133.39.75.173\/?page_id=89","title":{"rendered":"About the tissue transcriptome"},"content":{"rendered":"<div id=\"pl-89\"  class=\"panel-layout\" ><div id=\"pg-89-0\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-89-0-0\"  class=\"panel-grid-cell\" ><div id=\"panel-89-0-0-0\" class=\"so-panel widget widget_sow-editor panel-first-child\" data-index=\"0\" ><div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-editor so-widget-sow-editor-base\"\n\t\t\t\n\t\t>\n<div class=\"siteorigin-widget-tinymce textwidget\">\n\t<p style=\"text-align: justify;\">Shown here are the tissues and organs used for the tissue transcriptome dataset. RNA from those eight tissues was sequenced and used to construct gene models (in addition to computational gene prediction by Megante). Quantification of expression levels was then peformed by <a href=\"https:\/\/ccb.jhu.edu\/software\/hisat2\/index.shtml\">hisat2<\/a>, <a href=\"https:\/\/bioconductor.org\/packages\/release\/bioc\/html\/Rsubread.html\" target=\"_blank\" rel=\"noopener noreferrer\">Rsubread <\/a>and <a href=\"https:\/\/bioconductor.org\/packages\/release\/bioc\/html\/edgeR.html\" target=\"_blank\" rel=\"noopener noreferrer\">edgeR<\/a>.<\/p>\n<\/div>\n<\/div><\/div><div id=\"panel-89-0-0-1\" class=\"so-panel widget widget_sow-editor panel-last-child\" data-index=\"1\" ><div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-editor so-widget-sow-editor-base\"\n\t\t\t\n\t\t>\n<div class=\"siteorigin-widget-tinymce textwidget\">\n\t<p><img loading=\"lazy\" decoding=\"async\" class=\"size-full wp-image-67 alignnone\" src=\"http:\/\/133.39.75.173\/wp-content\/uploads\/Ol_RNAseq_tissueImage.png\" alt=\"ol_rnaseq_tissueimage\" width=\"916\" height=\"528\" \/><\/p>\n<\/div>\n<\/div><\/div><\/div><\/div><\/div>","protected":false},"excerpt":{"rendered":"<p>Shown here are the tissues and organs used for the tissue transcriptome dataset. RNA from those eight tissues was sequenced and used to construct gene models (in addition to computational gene prediction by Megante). Quantification of expression levels was then peformed by hisat2, Rsubread and edgeR.<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":39,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-89","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/pages\/89","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/133.39.75.173\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=89"}],"version-history":[{"count":11,"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/pages\/89\/revisions"}],"predecessor-version":[{"id":92,"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/pages\/89\/revisions\/92"}],"up":[{"embeddable":true,"href":"http:\/\/133.39.75.173\/index.php?rest_route=\/wp\/v2\/pages\/39"}],"wp:attachment":[{"href":"http:\/\/133.39.75.173\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=89"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}